PolyPhen-2 prediction of functional effects of human nsSNPs

PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations. Please, use the form below to submit your query.

Batch query allows submitting large number of SNPs in bulk. Please limit your queries by 150,000 amino acid residue substitutions or 5 million SNP chromosome coordinates.

15-Feb-2012:  Batch query now uses the same input format for protein substitutions as the standalone PolyPhen-2 software. See Sample Batch for examples.

Batch Query Data
Batch query
Upload batch file
Query description
E-mail address

Protein Sequences (optional)
Upload FASTA file
File description

Advanced Options
Classifier model
Genome assembly
Transcripts
Annotations


Sample Batch
Q92889 706 I T
Q92889 875 E G
XRCC1_HUMAN 399 R Q
NP_005792 59 L P
rs1799931
chr1:1267483 G/A
chr1:1158631 A/C,G,T