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software [2019/01/10 17:01]
schun
software [2019/10/23 14:54] (current)
akle
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 ===Tools for Statistical Genetics=== ===Tools for Statistical Genetics===
   * [[ JLIM ]] is a tool to test for shared genetic effect between two genetic association data, for example, a disease GWAS study and gene expression QTL (eQTL) study. ​   * [[ JLIM ]] is a tool to test for shared genetic effect between two genetic association data, for example, a disease GWAS study and gene expression QTL (eQTL) study. ​
 +   * [[ JLIM2.0 ]] is a version of JLIM which supports meta-analysis across more than one cohort of matching ancestry. ​
   * [[ http://​github.com/​sgchun/​nps|NPS ]] is a tool for polygenic risk scoring based on partitioning-based non-parametric shrinkage algorithm.   * [[ http://​github.com/​sgchun/​nps|NPS ]] is a tool for polygenic risk scoring based on partitioning-based non-parametric shrinkage algorithm.