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software [2014/03/27 11:57]
dmjordan
software [2015/11/24 19:23]
cassa
Line 3: Line 3:
 We develop and maintain a variety of software and web services. We develop and maintain a variety of software and web services.
  
-===Tools for Functional Prediction ​of Genetic ​Variants===+===Tools for Assessment ​of Variants===
   * [[http://​genetics.bwh.harvard.edu/​pph2|PolyPhen-2]] is a tool for predicting the effect of an amino acid substitution on protein structure and function, based on comparative genomics and experimentally determined protein structures. It is available as a web service, and can also be downloaded as a standalone application.   * [[http://​genetics.bwh.harvard.edu/​pph2|PolyPhen-2]] is a tool for predicting the effect of an amino acid substitution on protein structure and function, based on comparative genomics and experimentally determined protein structures. It is available as a web service, and can also be downloaded as a standalone application.
 +  * [[http://​genetics.bwh.harvard.edu/​snptrack|SNPtrack]] is a simple interface for mutation mapping and identifying causal mutations from whole-genome sequencing studies. It is available as a web service.
   * [[http://​genetics.bwh.harvard.edu/​scone/​|SCONE]] is a tool for predicting the effect of noncoding variation on regulatory sequences based on evolutionary conservation. It is available for download as a standalone application.   * [[http://​genetics.bwh.harvard.edu/​scone/​|SCONE]] is a tool for predicting the effect of noncoding variation on regulatory sequences based on evolutionary conservation. It is available for download as a standalone application.
 +
 ===Tools for Mass Spectrometry and Proteomics=== ===Tools for Mass Spectrometry and Proteomics===
   * [[http://​genetics.bwh.harvard.edu/​cgi-bin/​msfilter/​eagleeye.cgi|EagleEye]] is a tool for filtering noise and background proteins from LC-MS/MS spectra. It is available as a web service.   * [[http://​genetics.bwh.harvard.edu/​cgi-bin/​msfilter/​eagleeye.cgi|EagleEye]] is a tool for filtering noise and background proteins from LC-MS/MS spectra. It is available as a web service.
   * [[http://​genetics.bwh.harvard.edu/​msblast|MS-BLAST]] is a tool for searching protein sequences identified with tandem mass spectrometry against databases of protein sequences. It is available as a web service.   * [[http://​genetics.bwh.harvard.edu/​msblast|MS-BLAST]] is a tool for searching protein sequences identified with tandem mass spectrometry against databases of protein sequences. It is available as a web service.