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publications [2017/05/05 12:30]
ivan [All Other Publications Since 2012]
publications [2017/07/20 02:14]
ivan
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 ===== Selected Recent Publications ===== ===== Selected Recent Publications =====
  
- +  - Sohail M, Vakhrusheva OA, Sul JH, Pulit SL, Francioli LC; Genome of the Netherlands Consortium; Alzheimer’s Disease Neuroimaging Initiative, van den Berg LH, Veldink JH, de Bakker PIW, Bazykin GA, Kondrashov AS, Sunyaev SR. Negative selection in humans and fruit flies involves synergistic epistasis.\\ Science 356(6337):​539-542 (2017). PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​28473589|PMID:​28473589]]. 
-  - Cassa CA, Weghorn D, Balick DJ, Jordan DM, Nusinow D, Samocha KE, O'​Donnell-Luria A, MacArthur DG, Daly MJ, Beier DR, Sunyaev SR. Estimating the selective effects of heterozygous protein-truncating variants from human exome data. \\ Nat Genet. ​2017 Apr 03 doi:10.1038/​ng.3831. ​PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​28369035|PMID:​28369035]]. +  - Cassa CA, Weghorn D, Balick DJ, Jordan DM, Nusinow D, Samocha KE, O'​Donnell-Luria A, MacArthur DG, Daly MJ, Beier DR, Sunyaev SR. Estimating the selective effects of heterozygous protein-truncating variants from human exome data.\\ Nat Genet. ​49(5):806-810 (2017) ​PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​28369035|PMID:​28369035]]. 
-  - Chun S, Casparino A, Patsopoulos NA, Croteau-Chonka DC, Raby BA, De Jager PL, Sunyaev SR, Cotsapas C. Limited statistical evidence for shared genetic effects of eQTLs and autoimmune disease-associated loci in three major immune cell types. \\ Nat Genet. ​2017 Feb 20. doi10.1038/​ng.3795. ​PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​28218759|PMID:​28218759]]. +  - Chun S, Casparino A, Patsopoulos NA, Croteau-Chonka DC, Raby BA, De Jager PL, Sunyaev SR, Cotsapas C. Limited statistical evidence for shared genetic effects of eQTLs and autoimmune disease-associated loci in three major immune cell types.\\ Nat Genet. ​49(4):600-605 (2017) ​PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​28218759|PMID:​28218759]]. 
-  - Sul JH, Cade BE, Cho MH, Qiao D, Silverman EK, Redline S, Sunyaev S. Increasing Generality and Power of Rare-Variant Tests by Utilizing Extended Pedigrees. \\ Am J Hum Genet. ​2016 Oct 6;99(4):​846-859. doi: 10.1016/​j.ajhg.2016.08.015. ​PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​27666371|PMID:​27666371]].+  - Sul JH, Cade BE, Cho MH, Qiao D, Silverman EK, Redline S, Sunyaev S. Increasing Generality and Power of Rare-Variant Tests by Utilizing Extended Pedigrees.\\ Am J Hum Genet. 99(4):​846-859 ​(2016PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​27666371|PMID:​27666371]].
   - Savova V, Chun S, Sohail M, McCole RB, Witwicki R, Gai L, Lenz TL, Wu CT, Sunyaev SR, Gimelbrant AA. Genes with monoallelic expression contribute disproportionately to genetic diversity in humans. \\ Nat Genet. 2016 Mar;​48(3):​231-7. doi: 10.1038/​ng.3493. PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​26808112|PMID:​26808112]]. ​   - Savova V, Chun S, Sohail M, McCole RB, Witwicki R, Gai L, Lenz TL, Wu CT, Sunyaev SR, Gimelbrant AA. Genes with monoallelic expression contribute disproportionately to genetic diversity in humans. \\ Nat Genet. 2016 Mar;​48(3):​231-7. doi: 10.1038/​ng.3493. PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​26808112|PMID:​26808112]]. ​
   - Kazanov MD, Roberts SA, Polak P, Stamatoyannopoulos J, Klimczak LJ, Gordenin DA, Sunyaev SR. APOBEC-Induced Cancer Mutations Are Uniquely Enriched in Early-Replicating,​ Gene-Dense, and Active Chromatin Regions. \\ Cell Rep. 2015 Nov 10;​13(6):​1103-9. doi: 10.1016/​j.celrep.2015.09.077. Epub 2015 Oct 29. PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​26527001|PMID:​26527001]].   - Kazanov MD, Roberts SA, Polak P, Stamatoyannopoulos J, Klimczak LJ, Gordenin DA, Sunyaev SR. APOBEC-Induced Cancer Mutations Are Uniquely Enriched in Early-Replicating,​ Gene-Dense, and Active Chromatin Regions. \\ Cell Rep. 2015 Nov 10;​13(6):​1103-9. doi: 10.1016/​j.celrep.2015.09.077. Epub 2015 Oct 29. PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​26527001|PMID:​26527001]].
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 ===== All Other Publications Since 2012 ===== ===== All Other Publications Since 2012 =====
  
 +  - Savova V, Pearl EJ, Boke E, Nag A, Adzhubei I, Horb ME, Peshkin L. Transcriptomic insights into genetic diversity of protein-coding genes in X. laevis.\\ Dev Biol. 424(2):​181-188 (2017) PubMed [[https://​www.ncbi.nlm.nih.gov/​pubmed/​28283406|PMID:​28283406]].
   - Lenz TL, Spirin V, Jordan DM, Sunyaev SR. Excess of deleterious mutations around HLA genes reveals evolutionary cost of balancing selection.\\ Mol Biol Evol. 33(10):​2555-64 (2016) PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​27436009|PMID:​27436009]].   - Lenz TL, Spirin V, Jordan DM, Sunyaev SR. Excess of deleterious mutations around HLA genes reveals evolutionary cost of balancing selection.\\ Mol Biol Evol. 33(10):​2555-64 (2016) PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​27436009|PMID:​27436009]].
   - Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S; Genome of the Netherlands Consortium, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL. Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates.\\ Am J Hum Genet. 97(6):​775-89 (2015) PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​26581902|PMID:​26581902]].   - Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S; Genome of the Netherlands Consortium, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL. Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates.\\ Am J Hum Genet. 97(6):​775-89 (2015) PubMed [[http://​www.ncbi.nlm.nih.gov/​pubmed/​26581902|PMID:​26581902]].