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+ | ~~NOTOC~~ | ||
+ | ====== Cancer Bayesian Selection Estimation (CBaSE) ====== | ||
+ | |||
+ | ===== Download ===== | ||
+ | {{ : | ||
+ | |||
+ | ===== Usage ===== | ||
+ | |||
+ | === Running CBaSE === | ||
+ | |||
+ | < | ||
+ | python | ||
+ | </ | ||
+ | |||
+ | === Input file format === | ||
+ | |||
+ | ^Gene symbol^Mutation effect | ||
+ | |ECE1 |coding-synon |C |26| | ||
+ | |SAMD11 |missense |A |53| | ||
+ | |TNFRSF4 |nonsense |A |52| | ||
+ | |||
+ | |||
+ | (1) **Gene symbol** -- corresponds to the official gene symbol as used in the UCSC knownGene track.\\ | ||
+ | (2) **Mutation effect** -- one of [" | ||
+ | (3) **Mutated nucleotide** -- one of [A, C, G, T].\\ | ||
+ | (4) **Context index** -- 0-based indices of tri- or pentanucleotide contexts can be looked up [[pagename|here]]. | ||
+ | |||
+ | ===== CBaSE web tool ===== | ||
+ | |||
+ | The CBaSE web tool can be found [[http:// | ||
+ | |||
+ | ===== How to cite ===== | ||
+ | |||
+ | Please cite | ||
+ | |||
+ | Contact: [[dweghorn@research.bwh.harvard.edu|Donate Weghorn]] |