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jlim2.0 [2022/11/08 20:40] – [Download] schunjlim2.0 [2023/01/20 10:04] (current) – [JLIM 2.0] schun
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 ====== JLIM 2.0 ====== ====== JLIM 2.0 ======
  
-Has the added functionality of obtaining association statistics for the secondary trait in a cohort specific manner and then combining them before running JLIM. It is designed for meta-analyses of secondary trait cohorts with matching ancestries. JLIM 2.0 is described in [[https://www.biorxiv.org/content/10.1101/832162v2|preprint]].+Has the added functionality of obtaining association statistics for the secondary trait in a cohort specific manner and then combining them before running JLIM. It is designed for meta-analyses of secondary trait cohorts with matching ancestries. JLIM 2.0 is described in [[https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010557|Chun & Akle et al. 2022]].
  
 ===== Download ===== ===== Download =====
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   * {{ :jlim_2_example.tar.gz | JLIM2 example data }}   * {{ :jlim_2_example.tar.gz | JLIM2 example data }}
  
-Obstructive Sleep Apnea Data for Chun & Akle et al.+Obstructive Sleep Apnea Data for Chun and Akle et al.
  
-  * {{ :AvSaO2.sumstats.txt.gz | AvSaO2 discovery cohort association summary statistics }} +  * AvSaO2: {{ :AvSaO2.sumstats.txt.gz | discovery cohort association summary statistics }} {{ :avsao2.candidate_intervals.txt.gz | candidate genomic intervals }} 
-  * {{ :MinSaO2.sumstats.txt.gz | MinSaO2 discovery cohort association summary statistics }} +  * MinSaO2: {{ :MinSaO2.sumstats.txt.gz | discovery cohort association summary statistics }} {{ :minsao2.candidate_intervals.txt.gz | candidate genomic intervals }} 
-  * {{ :rdi3p.sumstats.txt.gz | AHI (rdi3p) discovery cohort association summary statistics }} +  * AHI (rdi3p): {{ :rdi3p.sumstats.txt.gz | discovery cohort association summary statistics }} {{ :rdi3p.candidate_intervals.txt.gz | candidate genomic intervals }} 
-  * {{ :EvDur.sumstats.txt.gz | Event Duration discovery cohort association summary statistics }}+  * Event Duration: {{ :EvDur.sumstats.txt.gz | discovery cohort association summary statistics }} {{ :evdur.candidate_intervals.txt.gz | candidate genomic intervals }}
 ===== How to install ===== ===== How to install =====