Cancer Bayesian Selection Estimation (CBaSE)
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Usage
Running CBaSE
python
Input file format
| Gene symbol | Mutation effect | Mutated nucleotide | Context index |
|---|---|---|---|
| ECE1 | coding-synon | C | 26 |
| SAMD11 | missense | A | 53 |
| TNFRSF4 | nonsense | A | 52 |
(1) Gene symbol – corresponds to the official gene symbol as used in the UCSC knownGene track.
(2) Mutation effect – one of [“missense”, “nonsense”, “coding-synon”, “utr-3”, “utr-5”].
(3) Mutated nucleotide – one of [A, C, G, T].
(4) Context index – 0-based indices of tri- or pentanucleotide contexts can be looked up here.
CBaSE web tool
The CBaSE web tool can be found here.
How to cite
Please cite
Contact: Donate Weghorn