SNPtrack is a pipeline for processing Next Generation Sequencing Data targeted at elucidation of phenotype causing mutations by identifying phenotipically derived regions in the organism's genome (e.g. Zebrafish, Mouse, C.elegans, Drosophila...).
Designed to be used mainly by general scientific audience with no bioinformatics knowledge required.
Submit your data to our cluster and receive the processing results in a visual interface. Get your mutation area with considerably less effort and materials required than with classical mapping approaches.
SNPtrack manual can be found here. Sample results here. Please use the latest versions of Google Chrome, other and older browsers may not fully support uploading of large files or interactive interfaces. Attention! Next Gen. Sequencing data files are large, depending on your location uploading of 5-10Gb size files might take up to few hours!
Only .gz and .bz2 raw read (fastq) files are accepted currently! Please don't upload tar'ed directories or other unrelated files!
Upload affected (AF)
Upload unaffected (UF)
You have uploaded more than 2 files per each pool. Do you want to submit more than one batch/sample for analysis? Please select files for this batch:
Select files for affected
First read (required):
Second read (paired-end):
Select files for unaffected
First read (required):
Second read (paired-end):
Please review carefully before submitting
Type of NGS reads:
Pool sizes (number of indv.):
Email (sends session id):
Please read the following statements and agree before you proceed:
Agreement for inclusion of SNPs and other variants into databases.
You agree that by submitting data to our servers you are granting permission to include any found variants (SNPs, indels etc.) into a public database of known variation for the benefit of others.
This database is used for filtering out non-casual variation and greatly expedites causal variant discovery. SNPtrack team reserves the right to submit data from its' databases to other public databases (i.e. dbSNP) for the benefit of others.
Although SNPs in regions around the mapped mutation sites should not be added to the database, we cannot 100% guarantee that the actual causal SNP or variant will not end up there.
This is due to genomic assembly issues and inaccuracies, sequencing and annotations errors, possible mapping method limitations and misalignments.
Although reasonable care is taken to protect your data (by generating long session ids) SNPtrack team cannot guarantee full confidentiality and security of your data.
You should not share your session id in any manner that can compromise the security of your data and analysis results.
SNPtrack team does not accept any liability for lost, stolen, accessed, made publicly available or misused data.
If you have any question regarding confidentiality and security of your data before submission or if you feel it is not safe please email to: firstname.lastname@example.org for assistance and questions.
SNPtrack team reserves the right to access submitted data and results for the purpose of further software and method development, debugging, review and analytics.
Please don't submit any proprietary or confidential data as its' full privacy cannot be guaranteed.
No warranty or fitness of a particular purpose
This resource is designed as a tool for Research purpose only.
SNPtrack team disclaims any warranty for the SOFTWARE PRODUCT. The SOFTWARE PRODUCT is provided 'As Is' without any express or implied warranty of any kind, including but not limited to any warranties of merchantability, noninfringement, or fitness of a particular purpose. SNPtrack team does not warrant or assume responsibility for the accuracy or completeness of any information, text, graphics, links or other items contained within the SOFTWARE PRODUCT. SNPtrack team makes no warranties respecting any harm that may be caused by the transmission of a computer virus, worm, time bomb, logic bomb, or other such computer program. SNPtrack team further expressly disclaims any warranty or representation to Authorized Users or to any third party.
In no event shall SNPtrack team be liable for any damages (including, without limitation, lost profits, business interruption, or lost information) rising out of use of or inability to use the SOFTWARE PRODUCT, even if the SNPtrack team has been advised of the possibility of such damages. In no event will SNPtrack team be liable for loss of data or for indirect, special, incidental, consequential (including lost profit), or other damages based in contract, tort or otherwise. SNPtrack team shall have no liability with respect to the content of the SOFTWARE PRODUCT or any part thereof, including but not limited to errors or omissions contained therein, libel, infringements of rights of publicity, privacy, trademark rights, other rights, business interruption, personal injury, loss of privacy, or the disclosure of confidential information.
No part of this SOFTWARE PRODUCT can be used unless licensed under an appropriate license or is open-source. You must not remove or alter any copyright notices in accessible code or modules.
No part of this SOFTWARE PRODUCT, unless stated differently, can be used to design, implement, sell, make available or otherwise distribute any analogous or similar services (online or otherwise) without permission from the developers.