BLASTP2 Result
BLASTP 2.0a8MP-WashU [25-Feb-1997] [Build 20:41:24 Feb 25 1997]
Reference: Gish, Warren (1994-1997). unpublished.
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10.
Query= query_sequence
(120 letters)
Echofilter:
>query_sequence
YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN
MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK
Database: nrdb Release 1.Apr.1998
303,844 sequences; 91,073,076 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Query sequence and locally-aligned HSPs from database sequences
0 30 60 90 120
| | | | |120
query_sequence | __________________________________________________
^ v sptrembl|P79948|P7 | __________________________________________________
^ v sptrembl|O12971|O1 | __________________________________________________
^ v sptrembl|O13130|O1 | __________________________________________________
^ v sptrembl|O09010|O0 | __________________________________________________
^ v sptrembl|O00589|O0 | __________________________________________________
^ v sptrembl|O12970|O1 | __________________________________________________
^ v sptrembl|O12972|O1 | __________________________________________________
^ v sptrembl|P79949|P7 | __________________________________________________
^ v sptrembl|O09009|O0 | __________________________________________________
^ v sptrembl|P79952|P7 | __________________________________________________
^ v sptrembl|O00588|O0 | ______________________________________________
^ v sptrembl|O09008|O0 | _________________________________________________
^ v sptrembl|O00587|O0 | _________________________________________________
^ v sptremblnew|E12495 | _________________________________________________
^ v swiss|Q24342|FNG_D | _________________________________________________
^ v sptrembl|O23378|O2 | ________________________________
^ v sptrembl|O23072|O2 | ________________________________
^ v sptrembl|O23042|O2 | _______________________________
^ v sptrembl|Q47804|Q4 | _______
^ v trembl|U02120|MG02 | ______________
^ v sptrembl|P91563|P9 | _______________________
Alignments:
^ = sptrembl|P79948|P79948 LUNATIC FRINGE.//:trembl|U77640|XLU77640_1 product:
"lunatic fringe"; Xenopus laevis lunatic fringe mRNA, complete
cds. //:gp|U77640|1679782 lunatic fringe [Xenopus laevis]
Length = 375
0 80 160 240 320
| | | | | |375
sptrembl|P79948|P7994 | __________________________________________________
Local hits (HSPs) | _______________
Score = 648 (228.1 bits), Expect = 1.3e-63, P = 1.3e-63
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN
Sbjct: 181 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 240
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK 120
MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK
Sbjct: 241 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK 300
^ = sptrembl|O12971|O12971 LUNATIC FRINGE.//:trembl|U91849|GGU91849_1 product:
"lunatic fringe"; Gallus gallus lunatic fringe mRNA, complete cds.
//:gp|U91849|1930053 lunatic fringe [Gallus gallus]
Length = 363
0 80 160 240 320
| | | | | |363
sptrembl|O12971|O1297 | __________________________________________________
Local hits (HSPs) | ________________
Score = 597 (210.2 bits), Expect = 3.3e-58, P = 3.3e-58
Identities = 110/120 (91%), Positives = 114/120 (95%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YDKFIES +KWFCHVDDDNYVNVRTLVKLLS Y HT DIYIGKPSLDRPIQATERISE+
Sbjct: 169 YDKFIESGRKWFCHVDDDNYVNVRTLVKLLSSYPHTQDIYIGKPSLDRPIQATERISENK 228
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK 120
M PV+FWFATGGAGFCISRGLALKMSPWASGGHFM+TAEKIRLPDDCTIGYIIESVLGVK
Sbjct: 229 MHPVHFWFATGGAGFCISRGLALKMSPWASGGHFMSTAEKIRLPDDCTIGYIIESVLGVK 288
^ = sptrembl|O13130|O13130 C-FRINGE 1.//:trembl|U97157|GGU97157_1 product:
"c-fringe 1"; Gallus gallus c-fringe 1 mRNA, complete cds.
//:pironly|JC5536|JC5536 C-Fringe protein 1 -
chicken//:gp|U97157|2183043 c-fringe 1 [Gallus gallus]
Length = 363
0 80 160 240 320
| | | | | |363
sptrembl|O13130|O1313 | __________________________________________________
Local hits (HSPs) | ________________
Score = 594 (209.1 bits), Expect = 6.9e-58, P = 6.9e-58
Identities = 109/120 (90%), Positives = 114/120 (95%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YDKFIES +KWFCHVDDDNYVNVRTLVKLLS Y HT DIYIGKPSLDRPIQATERISE+
Sbjct: 169 YDKFIESGRKWFCHVDDDNYVNVRTLVKLLSSYPHTQDIYIGKPSLDRPIQATERISENK 228
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK 120
M PV+FWFATGGAGFCISRGLALKMSPWASGGHFM+TA+KIRLPDDCTIGYIIESVLGVK
Sbjct: 229 MHPVHFWFATGGAGFCISRGLALKMSPWASGGHFMSTAQKIRLPDDCTIGYIIESVLGVK 288
^ = sptrembl|O09010|O09010 LUNATIC FRINGE PROTEIN HOMOLOG
PRECURSOR.//:trembl|AF015768|AF015768_1 gene: "lunatic-fringe";
product: "lunatic fringe"; Mus musculus lunatic fringe
(lunatic-fringe) mRNA, complete cds. //:trembl|U94351|MMU94351_1
product: "lunatic fringe precursor"; Mus musculus lunatic fringe
precursor mRNA, complete cds. //:gp|U94351|2204357 lunatic fringe
precursor [Mus musculus]//:gp|AF015768|2454570 lunatic fringe [Mus
musculus]
Length = 378
0 80 160 240 320
| | | | | |378
sptrembl|O09010|O0901 | __________________________________________________
Local hits (HSPs) | _______________
Score = 559 (196.8 bits), Expect = 3.5e-54, P = 3.5e-54
Identities = 98/119 (82%), Positives = 111/119 (93%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YD+FIES KKWFCHVDDDNYVN+R L++LL+ Y HT D+YIGKPSLDRPIQATERISE
Sbjct: 184 YDRFIESGKKWFCHVDDDNYVNLRALLRLLASYPHTQDVYIGKPSLDRPIQATERISEHK 243
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGV 119
+RPV+FWFATGGAGFCISRGLALKM PWASGGHFM+TAE+IRLPDDCTIGYI+E++LGV
Sbjct: 244 VRPVHFWFATGGAGFCISRGLALKMGPWASGGHFMSTAERIRLPDDCTIGYIVEALLGV 302
^ = sptrembl|O00589|O00589 LUNATIC FRINGE (FRAGMENT).//:trembl|U94354|HSU94354_1
product: "lunatic fringe"; Human lunatic fringe mRNA, partial cds.
//:gp|U94354|2204351 lunatic fringe [Homo sapiens]
Length = 257
0 60 120 180 240
| | | | | |257
sptrembl|O00589|O0058 | __________________________________________________
Local hits (HSPs) | ______________________
Score = 552 (194.3 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 96/119 (80%), Positives = 111/119 (93%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YD+FIES +KWFCHVDDDNYVN+R L+ LL+ Y HT D+Y+GKPSLDRPIQA ER+SE+
Sbjct: 81 YDRFIESGRKWFCHVDDDNYVNLRALLLLLASYPHTLDVYVGKPSLDRPIQAMERVSENK 140
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGV 119
+RPV+FWFATGGAGFCISRGLALKMSPWASGGHFMNTAE+IRLPDDCTIGYI+E++LGV
Sbjct: 141 VRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGV 199
^ = sptrembl|O12970|O12970 RADICAL FRINGE.//:trembl|U82088|GGU82088_1 product:
"radical fringe"; Gallus gallus radical fringe mRNA, complete cds.
//:gp|U82088|1932791 radical fringe [Gallus gallus]
Length = 372
0 80 160 240 320
| | | | | |372
sptrembl|O12970|O1297 | __________________________________________________
Local hits (HSPs) | ________________
Score = 474 (166.9 bits), Expect = 3.6e-45, P = 3.6e-45
Identities = 84/121 (69%), Positives = 104/121 (85%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERI-SES 59
YDKF+ES +KWFCHVDDDNYVN RTL++LLS +S + D+Y+G+PSLD PI+A + + S+
Sbjct: 177 YDKFLESGQKWFCHVDDDNYVNPRTLLRLLSAFSPSQDVYVGRPSLDHPIEAADHVQSDG 236
Query: 60 NMRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGV 119
+ V FWFATGGAGFCISRGLALKMSPWAS G+F++TAE++RLPDDCTIGYIIE +L V
Sbjct: 237 SKTSVKFWFATGGAGFCISRGLALKMSPWASLGNFISTAERVRLPDDCTIGYIIEGLLEV 296
Query: 120 K 120
K
Sbjct: 297 K 297
^ = sptrembl|O12972|O12972 RADICAL FRINGE.//:trembl|U91850|GGU91850_1 product:
"radical fringe"; Gallus gallus radical fringe mRNA, complete cds.
//:gp|U91850|1930055 radical fringe [Gallus gallus]
Length = 372
0 80 160 240 320
| | | | | |372
sptrembl|O12972|O1297 | __________________________________________________
Local hits (HSPs) | ________________
Score = 474 (166.9 bits), Expect = 3.6e-45, P = 3.6e-45
Identities = 84/121 (69%), Positives = 104/121 (85%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERI-SES 59
YDKF+ES +KWFCHVDDDNYVN RTL++LLS +S + D+Y+G+PSLD PI+A + + S+
Sbjct: 177 YDKFLESGQKWFCHVDDDNYVNPRTLLRLLSAFSPSQDVYVGRPSLDHPIEAADHVQSDG 236
Query: 60 NMRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGV 119
+ V FWFATGGAGFCISRGLALKMSPWAS G+F++TAE++RLPDDCTIGYIIE +L V
Sbjct: 237 SKTSVKFWFATGGAGFCISRGLALKMSPWASLGNFISTAERVRLPDDCTIGYIIEGLLEV 296
Query: 120 K 120
K
Sbjct: 297 K 297
^ = sptrembl|P79949|P79949 RADICAL FRINGE.//:trembl|U77641|XLU77641_1 product:
"radical fringe"; Xenopus laevis radical fringe mRNA, complete
cds. //:gp|U77641|1679784 radical fringe [Xenopus laevis]
Length = 340
0 70 140 210 280
| | | | | |340
sptrembl|P79949|P7994 | __________________________________________________
Local hits (HSPs) | _________________
Score = 471 (165.8 bits), Expect = 7.5e-45, P = 7.5e-45
Identities = 80/120 (66%), Positives = 100/120 (83%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YDKF+ SDKKWFCH+DDDNY+N+ L+ LLS +SH+ D+Y+G+PSLD P++ +R+
Sbjct: 167 YDKFVLSDKKWFCHLDDDNYLNLHALLDLLSTFSHSTDVYVGRPSLDHPVETVDRMKGDG 226
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK 120
+ FWFATGGAGFCISRGLALKMSPWAS G+F++TAEK+RLPDDCTIGYIIE +L VK
Sbjct: 227 SGSLKFWFATGGAGFCISRGLALKMSPWASMGNFISTAEKVRLPDDCTIGYIIEGMLDVK 286
^ = sptrembl|O09009|O09009 RADICAL FRINGE PROTEIN HOMOLOG
PRECURSOR.//:trembl|AF015770|AF015770_1 gene: "radical-fringe";
product: "radical fringe"; Mus musculus radical fringe
(radical-fringe) mRNA, complete cds. //:trembl|U94350|MMU94350_1
product: "radical fringe precursor"; Mus musculus radical fringe
precursor mRNA, complete cds. //:gp|U94350|2204355 radical fringe
precursor [Mus musculus]//:gp|AF015770|2454574 radical fringe [Mus
musculus]
Length = 332
0 70 140 210 280
| | | | | |332
sptrembl|O09009|O0900 | __________________________________________________
Local hits (HSPs) | __________________
Score = 469 (165.1 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 82/121 (67%), Positives = 100/121 (82%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YDKF+ES +KWFCHVDDDNYVN ++L+ LLS +S DIY+G+PSLD PI+ATER+
Sbjct: 132 YDKFLESGRKWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGGG 191
Query: 61 M-RPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGV 119
V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAE++RLPDDCT+GYI+E +LG
Sbjct: 192 TSNTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGA 251
Query: 120 K 120
+
Sbjct: 252 R 252
^ = sptrembl|P79952|P79952 XFRINGE2.//:trembl|U79750|XLU79750_1 gene:
"Xfringe2"; product: "Xfringe2"; Xenopus laevis Xfringe2
(Xfringe2) mRNA, complete cds. //:gp|U79750|1711197 Xfringe2
[Xenopus laevis]
Length = 340
0 70 140 210 280
| | | | | |340
sptrembl|P79952|P7995 | __________________________________________________
Local hits (HSPs) | _________________
Score = 455 (160.2 bits), Expect = 3.7e-43, P = 3.7e-43
Identities = 78/120 (65%), Positives = 97/120 (80%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
YD F+ SD KWFCH+DDDNY+N+ L+ LLS +SH+ D+Y+G+PSLD P+ +R+
Sbjct: 167 YDTFVLSDTKWFCHLDDDNYLNLHALLDLLSTFSHSTDVYVGRPSLDHPVGTVDRMKGDG 226
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK 120
+ FWFATGGAGFCISRGLALKMSPWAS G+F++TAEK+RLPDDCTIGYIIE +L VK
Sbjct: 227 SGSLKFWFATGGAGFCISRGLALKMSPWASMGNFISTAEKVRLPDDCTIGYIIEGMLDVK 286
^ = sptrembl|O00588|O00588 RADICAL FRINGE (FRAGMENT).//:trembl|U94353|HSU94353_1
product: "radical fringe"; Human radical fringe mRNA, partial cds.
//:gp|U94353|2204349 radical fringe [Homo sapiens]
Length = 191
0 40 80 120 160
| | | | | |191
sptrembl|O00588|O0058 | __________________________________________________
Local hits (HSPs) | _____________________________
Score = 432 (152.1 bits), Expect = 1.0e-40, P = 1.0e-40
Identities = 75/111 (67%), Positives = 93/111 (83%)
Query: 11 WFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN-MRPVNFWFA 69
WFCHVDDDNYVN R+L+ LLS +S + D+Y+G+PSLD PI+ATER+ + V FWFA
Sbjct: 1 WFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGRTVTTVKFWFA 60
Query: 70 TGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGVK 120
TGGAGFC+SRGLALKMSPWAS G FM+TAE++RLPDDCT+GYI+E +LG +
Sbjct: 61 TGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYIVEGLLGAR 111
^ = sptrembl|O09008|O09008 MANIAC FRINGE HOMOLOG PRECURSOR (MANIC
FRINGE).//:trembl|AF015769|AF015769_1 gene: "manic-fringe";
product: "manic fringe"; Mus musculus manic fringe (manic-fringe)
mRNA, complete cds. //:trembl|U94349|MMU94349_1 product: "manic
fringe precursor"; Mus musculus manic fringe precursor mRNA,
complete cds. //:gp|U94349|2204353 manic fringe precursor [Mus
musculus]//:gp|AF015769|2454572 manic fringe [Mus musculus]
Length = 321
0 70 140 210 280
| | | | | |321
sptrembl|O09008|O0900 | __________________________________________________
Local hits (HSPs) | __________________
Score = 415 (146.1 bits), Expect = 6.4e-39, P = 6.4e-39
Identities = 73/118 (61%), Positives = 92/118 (77%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
+D F+ S +WFCHVDDDNYVN + L++LL + D+Y+GKPSL+RPI A+E S++
Sbjct: 127 FDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKNR 186
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLG 118
+ V FWFATGGAGFCI+R LALKM PWASG HF++T+ IRLPDDCT+GYIIE LG
Sbjct: 187 TKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLG 244
^ = sptrembl|O00587|O00587 MANIC FRINGE PRECURSOR.//:trembl|U94352|HSU94352_1
product: "manic fringe precursor"; Human manic fringe precursor
mRNA, complete cds. //:gp|U94352|2204347 manic fringe precursor
[Homo sapiens]
Length = 321
0 70 140 210 280
| | | | | |321
sptrembl|O00587|O0058 | __________________________________________________
Local hits (HSPs) | __________________
Score = 407 (143.3 bits), Expect = 4.5e-38, P = 4.5e-38
Identities = 73/118 (61%), Positives = 90/118 (76%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
+D F+ S +WFCHVDDDNYVN R L++LL + D+Y+G+PSL+RPI A+E +
Sbjct: 127 FDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEPQPHNR 186
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLG 118
R V FWFATGGAGFCI+R LALKM+PWASG FM+T+ IRLPDDCT+GYIIE LG
Sbjct: 187 TRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIECKLG 244
^ = sptremblnew|E1249584|E1249584 BK390B3.1 (MANIC FRINGE PRECURSOR
PROTEIN).//:trembl|Z93096|HS390B3_1 gene: "Manic Fringe precursor";
product: "bK390B3.1 (Manic Fringe precursor protein)"; Human DNA
sequence from BAC 390B3 on chromosome 22q12-13. Contains the Manic
Fringe precursor gene, ESTs, a predicted CpG island and a GSS.
//:gp|Z93096|2832760 bK390B3.1 (Manic Fringe precursor protein)
[Homo sapiens]
Length = 321
0 70 140 210 280
| | | | | |321
sptremblnew|E1249584| | __________________________________________________
Local hits (HSPs) | __________________
Score = 407 (143.3 bits), Expect = 4.5e-38, P = 4.5e-38
Identities = 73/118 (61%), Positives = 90/118 (76%)
Query: 1 YDKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESN 60
+D F+ S +WFCHVDDDNYVN R L++LL + D+Y+G+PSL+RPI A+E +
Sbjct: 127 FDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEPQPHNR 186
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLG 118
R V FWFATGGAGFCI+R LALKM+PWASG FM+T+ IRLPDDCT+GYIIE LG
Sbjct: 187 TRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIECKLG 244
^ = swiss|Q24342|FNG_DROME FRINGE PROTEIN PRECURSOR (EC
2.4.-.-).//:trembl|L35770|DMFRINGE_1 gene: "fringe"; product:
"fringe protein"; Drosophila melanogaster fringe mRNA, complete
cds. //:pironly|A55376|A55376 fng protein precursor - fruit fly
(Drosophila melanogaster)//:gp|L35770|576583 fringe protein
[Drosophila melanogaster]
Length = 412
0 90 180 270 360
| | | | | |412
swiss|Q24342|FNG_DROM | __________________________________________________
Local hits (HSPs) | ______________
Score = 359 (126.4 bits), Expect = 5.5e-33, P = 5.5e-33
Identities = 67/119 (56%), Positives = 85/119 (71%)
Query: 2 DKFIESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQA-TERISESN 60
D F+ES KKWFCH DDDNYVNV LVKLL YS + D Y+GKPS+ P++ + + +
Sbjct: 222 DVFLESGKKWFCHFDDDNYVNVPRLVKLLDEYSPSVDWYLGKPSISSPLEIHLDSKNTTT 281
Query: 61 MRPVNFWFATGGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVLGV 119
+ + FWFATGGAGFC+SR L LKM P A GG F++ +KIR PDD T+G+IIE +L V
Sbjct: 282 NKKITFWFATGGAGFCLSRALTLKMLPIAGGGKFISIGDKIRFPDDVTMGFIIEHLLKV 340
^ = sptrembl|O23378|O23378 HYPOTHETICAL PROTEIN.//:trembl|Z97338|ATFCA3_12
Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 3
//:gp|Z97338|2244882 hypothetical protein [Arabidopsis thaliana]
Length = 520
0 110 220 330 440
| | | | | |520
sptrembl|O23378|O2337 | __________________________________________________
Local hits (HSPs) | ______
Score = 102 (35.9 bits), Expect = 0.00011, P = 0.00011
Identities = 28/77 (36%), Positives = 36/77 (46%)
Query: 6 ESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESNMRPVN 65
+ D +WF DDD V LV +LS+Y H Y+G S + N+R +
Sbjct: 165 DKDVRWFVFGDDDTVFFVDNLVTVLSKYDHRKWFYVGSNS---------EFYDQNVR-YS 214
Query: 66 FWFATGGAGFCISRGLA 82
F A GG GF IS LA
Sbjct: 215 FDMAFGGGGFAISASLA 231
^ = sptrembl|O23072|O23072 SIMILARITY TO S. CEREVISIAE BOB1
PROTEIN.//:trembl|AF013293|ATAF13293_17 gene: "A_IG005I10.16";
Arabidopsis thaliana BAC IG005I10. //:gp|AF013293|2252836 contains
weak similarity to S. cerevisiae BOB1 protein (PIR:S45444)
[Arabidopsis thaliana]
Length = 785
0 160 320 480 640
| | | | | |785
sptrembl|O23072|O2307 | __________________________________________________
Local hits (HSPs) | ____
Score = 95 (33.4 bits), Expect = 0.0010, P = 0.0010
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 6 ESDKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESNMRPVN 65
E + +W DDD LV++L +Y H YIG PS + +Q N+ +
Sbjct: 174 ERNVRWVVMGDDDTVFFTENLVRVLRKYDHKQFYYIGAPS-ESHLQ--------NLHQFS 224
Query: 66 FWFATGGAGFCISRGLA 82
+ A GG GF IS LA
Sbjct: 225 YGMAYGGGGFAISYPLA 241
^ = sptrembl|O23042|O23042 SIMILAR TO HYPOTHETICAL PROTEIN
PID|E327464.//:trembl|AC000098|ATAC98_11 gene: "YUP8H12.11";
Arabidopsis thaliana chromosome 1 YAC yUP8H12 complete sequence.
//:gp|AC000098|2388569 Similar to hypothetical protein PID|e327464
(gb|Z97338). [Arabidopsis thaliana]
Length = 479
0 100 200 300 400
| | | | | |479
sptrembl|O23042|O2304 | __________________________________________________
Local hits (HSPs) | ______
Score = 78 (27.5 bits), Expect = 0.52, P = 0.40
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 10 KWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESNMRPVNFWFA 69
+W+ DDD L + LS+Y HT+ YIG S E +++M + F
Sbjct: 171 RWYVFGDDDTIFIPENLARTLSKYDHTSWYYIGSTS--------EIYHQNSMFGHDMAF- 221
Query: 70 TGGAGFCISRGLA 82
GG G+ +S LA
Sbjct: 222 -GGGGYALSSSLA 233
^ = sptrembl|Q47804|Q47804 PLASMID PPD1 PD53.//:trembl|X96978|EFPPD1GNS_1 gene:
"pd53"; E.faecalis plasmid pPD1 pd53, pd113, pd96 and pd377 genes
//:gp|X96978|1272656 pd53 [Enterococcus faecalis]
Length = 53
0 10 20 30 40 50
| | | | | | |53
sptrembl|Q47804|Q4780 | __________________________________________________
Local hits (HSPs) | _________________
Score = 49 (17.2 bits), Expect = 6.2, P = 1.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 6 ESD-KKWFCHVDDDNYVN 22
E D KKW C + D Y+N
Sbjct: 5 EQDIKKWLCQLLDQTYLN 22
^ = trembl|U02120|MG02120_1 product: "unknown"; Mycoplasma genitalium random
genomic clone s7s8a10, partial cds. //:gp|U02120|409881 unknown
[Mycoplasma genitalium]
Length = 54
0 10 20 30 40 50
| | | | | | |54
trembl|U02120|MG02120 | __________________________________________________
Local hits (HSPs) | ___________________________________
Score = 49 (17.2 bits), Expect = 6.2, P = 1.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 26 LVKLLSRYSHT---NDIYIGKPSLDRPIQATERISESN 60
L LL+ Y T N+ KPSLD + ATE + SN
Sbjct: 1 LTDLLTSYKKTFEINNQVSQKPSLDVMLPATEFTNGSN 38
^ = sptrembl|P91563|P91563 SIMILAR TO HUMAN NECROSIS FACTOR-ALPHA-INDUCED
PROTEIN B12.//:trembl|U80842|CEUZC239_14 gene: "ZC239.15";
Caenorhabditis elegans cosmid ZC239. //:gp|U80842|1707216 similar
to human necrosis factor-alpha-induced protein B12 (GI:179304)
[Caenorhabditis elegans]//:worm|CE15138|ZC239.15 (ST. LOUIS)
Length = 246
0 50 100 150 200
| | | | | |246
sptrembl|P91563|P9156 | __________________________________________________
Local hits (HSPs) | ___________
Score = 66 (23.2 bits), Expect = 8.7, P = 1.0
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 12 FCHVDDDNYVNVR-TLVKLLSRYSHTNDIYIGKPSLDRP--IQATERISESNMRPVNFWF 68
FC V +D + L + + +YSH DIY K + P I +ER+SE P W
Sbjct: 134 FCMVGNDMSIPYNFNLYEFMEKYSHQFDIYFRKFFVHYPHKIVNSERLSEDE--PSRKWK 191
Query: 69 A 69
A
Sbjct: 192 A 192
Parameters:
matrix=BLOSUM62
E=10
V=50
B=50
filter=seg
echofilter
stats
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.441 same same same
q=9 r=2 0.244 0.0300 0.180
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 120 120 10. 60 3 11 22 0.24 30
29 0.24 32
Statistics:
Database: /booby1/data/db/nrdb
Title: nrdb Release 1.Apr.1998
Release date: 1.Apr.1998
Posted date: 11:05 PM MDT Apr 1, 1998
Format: BLAST
# of letters in database: 91,073,076
# of sequences in database: 303,844
# of database sequences satisfying E: 21
No. of states in DFA: 549 (54 KB)
Total size of DFA: 93 KB (128 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of processors used: 4
Search cpu time: 73.33u 2.48s 75.81t Elapsed: 00:00:44
Total cpu time: 73.40u 2.57s 75.97t Elapsed: 00:00:45
Start: Thu Apr 2 16:46:20 1998 End: Thu Apr 2 16:47:05 1998
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